Team
Keith D. Donaldson – Principal Investigator & CEO
Keith is a school-based technology integration specialist. He completed his BA at Morehouse College, concentrating in multimedia and education. His undergraduate honors research was with Mitchel Resnick of the MIT Media Lab. There he contributed to the development of the Constructopedia, a searchable, interactive database that assists children in working on design projects and making connections to the math and scientific ideas underlying those projects. In 2008, he received a Masters of Arts in Teaching from Simmons College with a concentration in urban education. Professionally, Keith has taken responsibility for overseeing infrastructure, equipment, purchases, and integration at several schools and non-profits. Previously, he was a research fellow at TERC, where he investigated the metacognitive self-regulation of black middle-school students and served as a math and engineering teacher in the Boston Public School system. Prior to that, Keith was the CTO and founder of Outerware. Outerware’s mission was to develop and market an enterprise application delivery system to Fortune 5000-size companies and ASPs. The solution reduced the total cost of ownership of enterprise applications and simplified the development, delivery, and maintenance of complex business systems. The company was sold in 2002.
J. Marius Vilkas, Ph.D. – Senior Software Engineer
Marius Vilkas is a theoretical physicist specializing in solving the problems of fundamental theoretical biophysics and the more applied problems of the computational physics and chemistry, fusion plasma physics, nanotechnology and biotechnology. He graduated with distinction from the Vilnius University specializing in physics. He received his PhD from the Vilnius University in Lithuania in the field of nonrelativistic many-body perturbation theory and its applications in physics and astrophysics. He had developed and implemented a fully relativistic multireference many-body perturbation theory. The developed computer program fully incorporates relativistic and QED effects and accounts for both nondynamic and dynamic correlations. For the scattering processes he developed several modules of R-matrix code to include second-order effective Hamiltonian into target description. At the University of Puerto Rico he was closely involved in the solid-state projects such as the development of the suitable materials for the Li-ion battery and on the catalytic properties of the metallic Pt and bimetallic Pt/Ru surfaces using direct molecular dynamics. Recently his research interests shifted to the theoretical studies of large biological structures. He implemented multicenter polarized continuum model into Gaussian03 programming package by solving Poisson equation using integral finite element method as well as analytical derivatives for the geometry optimization and frequency analysis.
Woody Sherman, Ph.D. – Founder
Woody has a Ph.D. from MIT in physical chemistry specializing in computational biophysical chemistry. His undergraduate degree is in physical chemistry, specializing in the study of quantum mechanical properties of organic polymers. Dr. Sherman has teaching experience at MIT working with students in chemistry classes both in laboratory and recitation environments. He did research in Biogen’s computational drug discovery unit applying novel techniques to the design of affinity-enhanced antibodies. He is currently working as Director of Applications Science at Schrödinger, a computational chemistry company.
David Green, Ph.D. – Founder
David Green is a researcher with 10 years of experience in the field of computational biophysics. He has a Bachelors degree in Chemistry from Simon Fraser University, a Ph.D. in Biological Chemistry from the Massachusetts Institute of Technology (where he held a Merck-MIT Graduate Fellowship), and spent three years as a post-doctoral associate jointly between MIT’s Bioengineering Division and the Computer Science and Artificial Intelligence Lab. He has developed software for biophysical characterization and optimization of protein binding sites, and has worked on the design of protein complexes with small molecules, peptides, and other proteins, after beginning his scientific career as a synthetic chemist. He is currently an Assistant Professor of Applied Mathematics at Stony Brook University, where he has a strong research program focused on the design of specifically interacting protein complexes. As a teaching assistant at MIT, he taught introductory college-level chemistry courses, and currently teaches graduate-level courses in Applied Mathematics and Computational Biology. He has published nine papers in the peer-reviewed literature and is an author of a unit of Current Protocols in Bioinformatics.
Karl Ruping – Founder
Karl is a Fellow in the Advanced Studies Program at the Massachusetts Institute of Technology, and a practicing patent attorney with a technical background in computer science. He has been legal counsel to numerous software companies, and has practical business experience in building early-stage venture start-ups. Karl is also the founder and president of IncTank, a technology incubator and early-stage venture capital firm.
